I'm starting to think saying we are at war with only Islamic fundalmentalist terrorists and not Islam is akin to saying we are at war with kamikazes but not the Japanese.
• Abu Hafs al-Masri Brigades
• Abu Sayyaf Group (ASG)
• Ahyaul Turaz al-Islami
• al Assirat al Moustaquim
• Al Barq
• Al Gama’a al Islamiyya (Islamic Group, IG)
• Al Ittihad al Islami (AIAI)
• Al Jama’a al Islamiyyah al Muqatilah bi Libya
• Al Jihad (Egyptian Islamic Jihad)
• Al Qa'nun
• Al Qaida
• Al Tawhid
• Al-Badhr Mujahidin (al-Badr)
• Allied Democratic Forces (ADF)
• Ansar al Islam
• Armed Islamic Group (GIA)
• Asbat al Ansar
• Asif Raza Commandoes
• Brotherhood of al-Ma’unah
• East Turkestan Islamic Movement
• Free Aceh Movement
• Great Eastern Islamic Raiders' Front (IBDA-C)
• HAMAS (Islamic Resistance Movement)
• Harakat ul Jihad I Islami (HUJI) (Movement of Islamic Holy War)
• Harakat ul Jihad I Islami/Bangladesh (HUJI-B) (Movement of Islamic Holy War)
• Harakat ul Mujahidin (HUM) (Movement of Holy Warriors)
• Harkat ul Ansar
• Hezb e Islami
• Hizb ut Tahrir al Islami
• Hizb-I Islami Gulbuddin (HIG)
• Hizballah (Party of God)
• Islami Inquilabi Mahaz
• Islami Jamaat e Tulba
• Islamic Army for the Liberation of the Holy Sites
• Islamic Army of Aden (IAA)
• Islamic Front
• Islamic International Peacekeeping Brigade (IIPB)
• Islamic Movement of Uzbekistan (IMU)
• Islamic Party of Turkestan
• Islamic Students League
• Jaish e Mohammed E Tanzeem(JEM)
• Jamaat I Islami
• Jamaat ul Mujahideen
• Jamiat ul Mujahideen (JUM)
• Jammu and Kashmir Freedom Force
• Jemaah Islamiya (JI)
• Kumpulan Mujahidin Malaysia (KMM)
• Lashkar e Tayyiba (LT)
• Liberation Party
• Libyan Islamic Fighting Group
• Moro Islamic Liberation Front
• Moroccan Islamic Combatant Group (GICM)
• Movement for the Struggle of the Jordanian Islamic Resistance
• Mujahedeen Kompak
• Mujahedin e Khalq Organization (MEK or MKO)
• New People’s Army (NPA)
• Palestine Islamic Jihad (PIJ)
• People Against Gangsterism and Drugs (PAGAD)
• Return Party
• Salafist Group for Call and Combat (GSPC)
• Salifiya Jihadiya
• Sipah I Sahaba/Pakistan
• Special Purpose Islamic Regiment (SPIR)
• Taliban
• Tehreek e Jaferia Pakistan (TJP)
• Tehreek e Nafaz e Shariat e Mohammadi (TNSM)
• Tehrik e Jehad e Islami
• Tunisian Combatant Group (TCG)
• Tunisian Islamic Front
• Turkish Hizballah
http://www.terrorism.com/index.php